PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10022126m | ||||||||
Common Name | EUTSA_v10022126mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 387aa MW: 43401.8 Da PI: 10.0237 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.1 | 1.5e-20 | 37 | 80 | 7 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 s + ++++kR+++++KKA+ELS+LC+++v+vi ++ +g+l++++ Thhalv10022126m 37 SSKATSLAKRQETVFKKAYELSTLCGTDVCVISYGLDGELKTWP 80 6788***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-4 | 17 | 82 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-14 | 34 | 114 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.465 | 36 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-13 | 37 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.56E-15 | 37 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MASSSSSSFS HSSSSPTNKK TTKFSKIQQT LFQKPSSSKA TSLAKRQETV FKKAYELSTL 60 CGTDVCVISY GLDGELKTWP EDRKKVEAMA RSYKSLDIKK RLKGQVDLRQ FLKKINKGDS 120 NTKKKKKVAS GSSDKYPDWD PRFNNYSVEQ LTLLIQSLER SLTTMQHRLR ALAESQKQRQ 180 NMHNTNMAHQ EQMITTTTAA LNHLHQHSNQ VPMDLFNQAM YGASSQIPPS ASSFNQAQSL 240 APIPNSLTIY QNPLTMYPNL NVESYLRGLQ GTGMSEFPSK NMLPYNNINN NNNNSVNGFP 300 KQFYQNGKVE DYSGYLGLQE TGINNMNDYP GLLWAQGIGI NGLQNMDMYG YNNSNINTNG 360 LSNQLVQFPT QRAEPVFQYG SINPKF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10022126m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006406581.1 | 0.0 | agamous-like MADS-box protein AGL103 | ||||
Swissprot | Q9LSB2 | 1e-104 | AG103_ARATH; Agamous-like MADS-box protein AGL103 | ||||
TrEMBL | V4LW47 | 0.0 | V4LW47_EUTSA; Uncharacterized protein | ||||
STRING | XP_006406581.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 7e-91 | AGAMOUS-like 103 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10022126m |
Entrez Gene | 18023751 |
Publications ? help Back to Top | |||
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