PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10021538m

Common Name

EUTSA_v10021538mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Dof

Protein Properties

Length: 206aa MW: 22503 Da PI: 9.5988

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10021538m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127	5.6e-40	30	90	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s Thhalv10021538m 30 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNAKRS 90 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	28	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MQDPAAYYQT MMAKQQQQTQ TQQQQTQFPE QEQLKCPRCD SPNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGALRNVPVG GGSRKNAKRS TSSSSPPSNS HSKKTKNPDP DPNSQNGTKP 120 DTDPTRMLYG FPIGDQDVKG MEIGGGSSFS SLLASNMQLG LGGIILDGSG WDPGMGLGIG 180 LRRNEAASNG GNPWTDLAMN RVEKN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10021538m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406292.1	1e-152	dof zinc finger protein DOF3.1
Swissprot	Q94AR6	1e-93	DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBL	V4LBD4	1e-151	V4LBD4_EUTSA; Uncharacterized protein
STRING	XP_006406292.1	1e-152	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	3e-77	DOF zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Thhalv10021538m
Entrez Gene	18023964

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]