PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10021324m

Common Name

EUTSA_v10021324mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 270aa MW: 28773.8 Da PI: 5.6362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10021324m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.1	0.00018	153	193	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ +++ L++l+ + +K + a++L +A+ YIk Lq Thhalv10021324m 153 KVRKERLGERITALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 193 6678889999******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.623	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-11	146	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-7	151	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.24E-4	151	197	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGDTAEDQED QAMAEAAGVA SFSELLMLSD DVLGSSDHHR QDNGGDGGQD SFGFVFSGRN 60 RSRMLCFSGG YQNDDESLCL EPSVPSGVSV PDPSSCINSN CKNSNDACTV DKSSKSSNKK 120 RTGSGNGQNP DHDRKPGKRC KRNQDNSSVG IAKVRKERLG ERITALQQLV SPYGKTDAAS 180 VLHEAMGYIK FLQDQIQVLC SPYLINYSLD GGGVVTGDIM PGKKVKDLRS RGLCLVPVSS 240 TVHVENSNGA DFWSPATMGH TTSPSMNLE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10021324m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406495.1	0.0	transcription factor bHLH113 isoform X1
Refseq	XP_024015434.1	0.0	transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-154	BH113_ARATH; Transcription factor bHLH113
TrEMBL	V4M6I6	0.0	V4M6I6_EUTSA; Uncharacterized protein
STRING	XP_006406495.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-133	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10021324m
Entrez Gene	18024775

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]