PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10021297m | ||||||||
Common Name | EUTSA_v10021297mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 31981.9 Da PI: 9.1224 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.5e-51 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+d+elv++yL k++ ++ + v+ evd++k+ePwd+p++++ + k+wyf+s++d+kyatg+r+nrat++gyWkatgkd+++ + Thhalv10021297m 18 LPPGFRFHPRDDELVCDYLMKRTVRSLYQP-VVLIEVDLNKCEPWDIPRMARVGGKDWYFYSQKDRKYATGQRTNRATATGYWKATGKDRAIQR 110 79*****************99977777555.5899*************8888899*************************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+lvg++ktLvfy+grapkg+kt+Wvmhe+rl Thhalv10021297m 111 -NGSLVGMRKTLVFYRGRAPKGRKTEWVMHEFRL 143 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-59 | 10 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.39 | 18 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEAKDENKGS ISMVEANLPP GFRFHPRDDE LVCDYLMKRT VRSLYQPVVL IEVDLNKCEP 60 WDIPRMARVG GKDWYFYSQK DRKYATGQRT NRATATGYWK ATGKDRAIQR NGSLVGMRKT 120 LVFYRGRAPK GRKTEWVMHE FRLQGTLLHH SPNSLKEEWV LCRVFHKNNN EVDRDNNMRS 180 CSDETASASM DSYINFDHHQ IINQQVPCFS NLSQNQTNQS GLVSKNPNPF FNPSSEQMVL 240 RALLSQLTKS VEKSQSHGEG SSESQLTDIG NQSHAWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-51 | 14 | 169 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10021297m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 1e-85 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 1e-85 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407275.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-136 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | V4M8M1 | 0.0 | V4M8M1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407275.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-174 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10021297m |
Entrez Gene | 18025191 |