PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021271m
Common NameEUTSA_v10021271mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 284aa    MW: 31861.6 Da    PI: 8.627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021271mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.4e-09755254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +  +  rE+ RR+++N+ f eL  +l ++     +K++Ka+iL+ +v+ +k+L
  Thhalv10021271m  7 KSQKAGREKLRREKLNEHFVELGNVLDPD----RPKNDKATILTDTVQLLKEL 55
                     5566779******************9997....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.084555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-12578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-6659No hitNo description
SuperFamilySSF474598.51E-13671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-7755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-61161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDVSTRKSQK AGREKLRREK LNEHFVELGN VLDPDRPKND KATILTDTVQ LLKELTSEVN  60
KLKFEYTTLT DESRELTQEK NDLREEKTSL KSDIENLNLQ YQQRLRSMST WGAAMDHTVM  120
MAPPPSFPYP MPMAMPPGSI PMHPSMPSYT YFGNQNPSMI PAPCPTYMPY MPPNTVVEQQ  180
SVHIPQNPSN RSREPRTKVS RESRSEKAED SNDVATQLEL KTPGSTSDKD TLQRPEKTKR  240
SKRNSNNSIE ESSHSSKCSS SPSVRDNSSS SSVAGGQKPD DAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021271m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3175070.0AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBankAY0651070.0AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBankAY0817030.0AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406448.10.0transcription factor bHLH121
SwissprotQ9LT231e-171BH121_ARATH; Transcription factor bHLH121
TrEMBLV4NN550.0V4NN55_EUTSA; Uncharacterized protein
STRINGXP_006406448.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-154bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]