PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10021253m | ||||||||
Common Name | EUTSA_v10021250mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 290aa MW: 32114.8 Da PI: 10.5154 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.9 | 3e-32 | 151 | 207 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF Thhalv10021253m 151 NEPIFVNAKQYQAILRRRQHRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGSGGRF 207 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.9E-36 | 149 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.507 | 150 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.2E-26 | 152 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-22 | 153 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 155 | 175 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.4E-22 | 184 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MTDKSNNTLS MKMEMMSTHF PGMQQTGFQL QEHDSSSTQS TRGDSSGEVA SLGEHNNNKR 60 YGHSSVTHLS DAGYKENAGN PSGSHSKSIL SKVSQNSAVP STIEASWPLH GTETPHYNGF 120 MSFPYASQHT HPQIGGLVPC RMLLPHNTQE NEPIFVNAKQ YQAILRRRQH RAKLEAQNKL 180 IKVRKPYLHE SRHLHALKRA RGSGGRFLNT KKLQESKSPQ SPSFLGTPRF FKNPQGKFRQ 240 REIPGVGVGS SGSATSCSDL TGNNNDMFQQ NPQFRFSGYP SNHHVSVLM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-19 | 151 | 229 | 2 | 78 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10021253m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015184.1 | 0.0 | nuclear transcription factor Y subunit A-6 isoform X2 | ||||
Swissprot | Q9LVJ7 | 1e-130 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | V4LXM9 | 0.0 | V4LXM9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407138.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G14020.1 | 1e-122 | nuclear factor Y, subunit A6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10021253m |
Entrez Gene | 18024129 |
Publications ? help Back to Top | |||
---|---|---|---|
|