PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10021246m

Common Name

EUTSA_v10021246mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NF-YC

Protein Properties

Length: 295aa MW: 32560.2 Da PI: 4.791

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10021246m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.4	1.6e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ ++ +v+r ++fdfl ++v + Thhalv10021246m 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.0E-19	4	89	IPR009072	Histone-fold
Pfam	PF00808	2.7E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK 60 TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHAQGQGHGQ GDVTMDDRSI SKRRKPISDE 120 VNDSDEEYKK SKTQEVGNAK PSGRGGRGRG RGRGRGGRAA RALERENLNR EMELGTNMAE 180 QPPPQDSIQM HVSESSPQEN EKKDVDGGIA ASNEDTKQQL QCPKEGIDFD LNAETLDLNE 240 TKLAPVGGTE TATATASEEY PGWPMMELGK IDPAQLASLG KRIDEDDEDY DEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	155	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10021246m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353067	0.0	AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407330.1	0.0	dr1-associated corepressor
TrEMBL	E4MX20	0.0	E4MX20_EUTHA; mRNA, clone: RTFL01-20-D23
TrEMBL	V4M8R7	0.0	V4M8R7_EUTSA; Uncharacterized protein
STRING	XP_006407330.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-133	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Thhalv10021246m
Entrez Gene	18025262