PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021161m
Common NameEUTSA_v10021161mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 317aa    MW: 36056.8 Da    PI: 4.5401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021161mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-1976126155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+k+++g
  Thhalv10021161m  76 CSFRGVRQRV-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAASAYDEAAKAMYG 126
                      579*****99.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.65E-3276135No hitNo description
PfamPF008471.1E-1376126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3177135IPR001471AP2/ERF domain
PROSITE profilePS5103222.07677134IPR001471AP2/ERF domain
SMARTSM003802.8E-3877140IPR001471AP2/ERF domain
PRINTSPR003676.1E-107889IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2178134IPR016177DNA-binding domain
PRINTSPR003676.1E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAVYEQTGID TSKKRKPRAR ADGTTVADRL KKWREYNETV DASSIEEGEK PRRKVPAKGS  60
KKGCMKGKGG PDNSHCSFRG VRQRVWGKWV AEIREPNRGS RLWLGTFPTA EEAASAYDEA  120
AKAMYGTLAR LNFPECVGSE FTSTSSHSEV CTVEDKAVLG GEVCVKQEDA DCESKPFSQT  180
LDVKEESSET SRLADEHRDA NRMLNYDWLN EFEQQYLKEK EKPKEEDKEV IQQLEKQETD  240
LLSVADYGWL NDMEKEQGFW NSHEFFDVDE LLGDMNEGML PDPSPNQDQN RIYDSYPLQL  300
EPHDGHEFFD LSSLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1778134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-1766135373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00346DAPTransfer from AT3G11020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021161m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6533770.0EF653377.1 Thellungiella halophila DREB2B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407478.10.0dehydration-responsive element-binding protein 2B
SwissprotO821331e-134DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLB3SQD50.0B3SQD5_EUTHA; DREB2B
TrEMBLV4NQN90.0V4NQN9_EUTSA; Uncharacterized protein
STRINGXP_006407478.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.11e-126DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]