PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10021115m | ||||||||
Common Name | EUTSA_v10021115mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 331aa MW: 36798.8 Da PI: 9.7733 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.2e-30 | 263 | 320 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeH h+ Thhalv10021115m 263 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHSHS 320 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.6E-15 | 223 | 259 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-32 | 249 | 320 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.782 | 256 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-26 | 259 | 320 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-36 | 261 | 321 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 263 | 319 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MEEVEAASKS AIESCHGVLN LLSQQGNDSN SLMVETREAV SKFKKVASLL TRGSGHGKFR 60 RINNKFRSSF PQHIFLESPI CCVNDVSSDY TQVLAPEPLQ MVPASVVYDE IDPKHQLGHP 120 PLMLSHKMRV ERSFLELKPP PFRAPYQLIH NHQQIAYSRS NSGVNLKFDG SGSSCYTPSV 180 SNGSRSFVSS LSMDASVADY DRSSFHITGL SDQISQHSRK MCSGSLKCGS RSKCHCSKKR 240 KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE 300 RCIDETSMLI VTYEGEHSHS RILSSQSAHT * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-20 | 254 | 319 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10021115m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353314 | 0.0 | AK353314.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G13. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408166.1 | 0.0 | probable WRKY transcription factor 39 | ||||
Swissprot | Q9SR07 | 0.0 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | E4MXR7 | 0.0 | E4MXR7_EUTHA; mRNA, clone: RTFL01-24-G13 | ||||
TrEMBL | V4M0K8 | 0.0 | V4M0K8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408166.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3885 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04670.1 | 0.0 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10021115m |
Entrez Gene | 18025248 |
Publications ? help Back to Top | |||
---|---|---|---|
|