PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020970m
Common NameEUTSA_v10020970mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 370aa    MW: 41252.5 Da    PI: 9.0351
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020970mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.4e-16292328135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Thhalv10020970m 292 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 328
                      *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.0E-13148183IPR010399Tify domain
PROSITE profilePS5132014.578148183IPR010399Tify domain
PfamPF062002.8E-12151182IPR010399Tify domain
PfamPF062032.1E-15216258IPR010402CCT domain
PROSITE profilePS5101713.136216258IPR010402CCT domain
SMARTSM004016.9E-11286339IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.051286344IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13288347No hitNo description
Gene3DG3DSA:3.30.50.102.8E-15291333IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440292319IPR000679Zinc finger, GATA-type
CDDcd002024.02E-14292341No hitNo description
PfamPF003202.7E-14292328IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MENIKSSYQK KKKKKKIKSI KEFLFRSRLS VCPFSLYNQI LFIVNQHCLP PLSPSFSRVL  60
HTYRFGCSEQ QKRKTMDDLH GSDGGMHIGL AQDPMHVQYE HHDLHHINNG NGLMEDHVDN  120
GINEGVEIDI PAHPGISSDH RGEVVDRGSE NGDQLTLSFQ GQVYVFDRVS PEKVQAVLLL  180
LGGREVPQTL PTTLGSPHQN NRGLSGTPQR FSVPQRQASL IRFREKRKER NFDKTIRYTV  240
RKEVALRMQR KKGQFTSAKS SNDDSASTGS DWGSSQSWAL EGSETQKPEV LCRHCGISEK  300
STPMMRRGPE GPRTLCNACG LMWANKGTLR DLSKAPPPPQ IAQNLPADTN EDPNLEADQM  360
TGVAGDISS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1915KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020970m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406306.20.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL70.0GAT24_ARATH; GATA transcription factor 24
TrEMBLV4LV940.0V4LV94_EUTSA; Uncharacterized protein
STRINGXP_006406306.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.20.0ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]