PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020942m
Common NameEUTSA_v10020942mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 379aa    MW: 42306.5 Da    PI: 5.3157
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020942mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-32179233155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  Thhalv10020942m 179 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 233
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.02E-17177233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29178235IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-23179233IPR006447Myb domain, plants
PfamPF002492.8E-10181232IPR001005SANT/Myb domain
PfamPF143796.6E-20267313IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNNPVPCQVF PLVSGGSSSG FCNGMYVSAH ERTSSQVSGE GQRQEFSVEG TQSLPVISQP  60
REQKDMSWSS DHLQGFFDFP VPDPQAESSR AMVSSEELHS KSEWPDWANQ LISVDDGVEP  120
NWSELLGDPN VLDQDSKIPI LSSDTAKQEI VVYNQHHVDP SSMEKFNAKS SPASSVTSKQ  180
RMRWTPELHE AFVEAINQLG GSERATPKAV LKLINSPGLT IYHVKSHLQK YRTARYKPEL  240
IQDTEKPPEK NLTTIEDIKS LDLKTSIEIT EALRLQMEVQ KQLHAQLEIQ RSLQLQIEEQ  300
GRCLQIMIEK QQKLQEKKKG SSCSSPMPEA DLSAPSPDLL QVFPNSELSI NQKLQSSFCT  360
MDQSEAASGT TRKRVRKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-29179237260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-29179237260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-29179237260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-29179237260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-29179237260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-29179237260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-29179237260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-29179237260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020942m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014879.10.0myb family transcription factor PHL13 isoform X2
SwissprotF4J3P70.0PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLV4NSJ60.0V4NSJ6_EUTSA; Uncharacterized protein
STRINGXP_006408187.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]