PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020894m
Common NameEUTSA_v10020894mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 392aa    MW: 43649.8 Da    PI: 7.2781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020894mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.4e-09110134126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+ C  f + GtC+ G+ C+FaHg
  Thhalv10020894m 110 YKTRMCAKFKA-GTCRNGELCNFAHG 134
                      9**********.*************8 PP
2zf-CCCH18.53.6e-061982121125
                      GTS.--TTTTT-SS-S CS
          zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                        G +C+yG+rC+F+H
  Thhalv10020894m 198 F-GeECPYGERCNFIH 212
                      5.449*********** PP
3zf-CCCH37.44.2e-12276301127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ f   G+C++Gd+C+FaHg+
  Thhalv10020894m 276 WKTRLCMKFEI-GQCPFGDNCSFAHGQ 301
                      8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.0E-15107142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-8108140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849109136IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-4109135IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5110134IPR000571Zinc finger, CCCH-type
SMARTSM003560.011187214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.211187215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6187213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7189213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-8274305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971275302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-13275304IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7275301IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10276301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGW NQTQMIDSMV NPMNNEQVDL HSQSESQSQS QSQSQPPQQL  60
QPSLKRPRLV DDNLFNPASS FPPTSNNNNP SMVPSLNPPP VNKGTANIFY KTRMCAKFKA  120
GTCRNGELCN FAHGIEDLRQ PPSNWQEIVG PPVQDRERER ERERERERER PSSVSVGNNW  180
EDDQKIILRM KLCRKFCFGE ECPYGERCNF IHEDLSKFRE ESGKPRESSV ISVGTSVADS  240
PCVENGTTAY NQIDVNRQGG IPVPAPINSN GGVKFWKTRL CMKFEIGQCP FGDNCSFAHG  300
QAELHNSLGR VDGEAVNAVA SVIKQTVAPA NEAFAMKPTA QVTADSSGLN DEGRRKKCLL  360
KWSDSKKINR IYGDWIDDLP VGQKSTKPVQ S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159169RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020894m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535210.0AK353521.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-48-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406508.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLE4MYC40.0E4MYC4_EUTHA; mRNA, clone: RTFL01-48-H16
TrEMBLV4NNA60.0V4NNA6_EUTSA; Uncharacterized protein
STRINGXP_006406508.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein