PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020691m
Common NameEUTSA_v10020691mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 461aa    MW: 49496.2 Da    PI: 10.0681
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020691mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.44.9e-1589176186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk++k +  ++  + +s++++fd+l+
  Thhalv10020691m  89 CWSERATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKIAKTDIQCKNRIDTVKKKYKQEKVRIANG--GGRSRWVFFDKLD 176
                      7*************************************87666678899*********************99997..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2487178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEDEEEIRSH ASPTGSDSPD PSSSPPAGRI TVTVASTGPP SYSLTPPASS SLKDPDALAL  60
ALLPIQASGG VGGSSSNGRP SGGGGREDCW SERATAVLID AWGERYLELS RGNLKQKHWK  120
EVAEIVSSRE DYGKIAKTDI QCKNRIDTVK KKYKQEKVRI ANGGGRSRWV FFDKLDRLIG  180
STAKIPTAAP GTSGGGSPGG GGGGGSGLHK IPMGIPMGSR SHLYHQQAKA ATPPFNNLDR  240
LIGATARVSA ASFGGSGGGG GGGGSGNVPM GIPVSSRSSP FGQQGRTLQQ QQQGRTLQQQ  300
QQGMMVKRCS ESKRWRFKKR NASESDSESE AAMSDDSGDS LPPPPLSKRL KTEEKKKQEV  360
DGGGNKWREL TRAIMRFGEA YEQTENAKLQ QVVEMEKERM KFLKELELQR MQFFVKTQLE  420
ISQLKQCERR IGNTSNDHHS CKNNNNINSI VNNSNNDVGN *
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020691m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015647.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLV4LXL20.0V4LXL2_EUTSA; Uncharacterized protein
STRINGXP_006407116.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-180sequence-specific DNA binding transcription factors