PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020686m
Common NameEUTSA_v10020686mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 463aa    MW: 48838.5 Da    PI: 7.7803
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020686mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125782227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C +++rtG C yG+rC+F+H++
  Thhalv10020686m 57 DEPDCIYYLRTGVCGYGSRCRFNHPR 82
                     6899********************96 PP
2zf-CCCH37.15.2e-12104128327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++f+rtGtCk+G++Ck++H++
  Thhalv10020686m 104 HPVCQHFMRTGTCKFGASCKYHHPR 128
                      789********************96 PP
3zf-CCCH38.91.5e-12149173226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG+Ck+G +C+F H+
  Thhalv10020686m 149 GEKECSYYMRTGQCKFGLTCRFDHP 173
                      7899********************9 PP
4zf-CCCH39.97e-13307331226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++f+rtG Ck+G++C+++H+
  Thhalv10020686m 307 DQPECQYFMRTGDCKFGSSCRYHHP 331
                      689*********************9 PP
5zf-CCCH32.61.4e-10353378227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      + + C +fa+ G+Ck+G+ CkF H++
  Thhalv10020686m 353 GVAQCTHFAQHGICKFGPACKFDHSM 378
                      6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2395583IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-45582IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-95782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65983IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-56182IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6102129IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9103128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5106128IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6147174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389147175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5149174IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4153172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155305333IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6305332IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10307331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6308334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5311331IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554351379IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8353377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5354378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSLEW TSHGGETGVE ASMWRLGLSG GGAGGAGGGE SYPERPDEPD  60
CIYYLRTGVC GYGSRCRFNH PRDRGAVIGV VRGGDGALPE RMGHPVCQHF MRTGTCKFGA  120
SCKYHHPRQG ASSVTPVSLS YLGYPLRPGE KECSYYMRTG QCKFGLTCRF DHPVPLAVQG  180
PPQQQPQQQP QQQLQTIYPT LQSQPVPSSQ QYGLVLARPS LLPASYLQSH YGPPMVLPPG  240
MVPYPGWNPY QASLSAMPSP GTQPSIGSSS VYGIAPLSPS GTVYTGTYQS GASSNTSKEQ  300
SFPQRPDQPE CQYFMRTGDC KFGSSCRYHH PLDAVQPKTG VLLSSIGLPL RPGVAQCTHF  360
AQHGICKFGP ACKFDHSMAS SLSYSPSASS LTDMPVAPYP IGSSSLSGAS APVSSSNEPT  420
TEAVTAAVSS PMVSGLSRQE PAEASGDSAS VSGSVEAKTS SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020686m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407949.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D60.0V4M3D6_EUTSA; Uncharacterized protein
STRINGXP_006407949.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]