PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020676m
Common NameEUTSA_v10020676mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 467aa    MW: 50867.2 Da    PI: 8.967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020676mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.3e-32206262259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  Thhalv10020676m 206 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 262
                      8****************************************.***************8 PP
2WRKY105.13.7e-33349407159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Thhalv10020676m 349 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 407
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28193264IPR003657WRKY domain
SuperFamilySSF1182902.22E-25203264IPR003657WRKY domain
SMARTSM007743.4E-35205263IPR003657WRKY domain
PfamPF031061.5E-24206261IPR003657WRKY domain
PROSITE profilePS5081124.03206264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-36334409IPR003657WRKY domain
SuperFamilySSF1182904.18E-29341409IPR003657WRKY domain
PROSITE profilePS5081137.734344409IPR003657WRKY domain
SMARTSM007743.8E-38349408IPR003657WRKY domain
PfamPF031061.6E-25350407IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAVEDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYFFG GGDGLSLSPG PLSFVSSLFV  60
DNFPDVLTPD NQRTTSFSQL LAGAMSVSPG RGGGRSTAGM FTGGGPMFTI PSGFSPSSLL  120
TSPTFFPPQQ STAQTGFVQA QPQRPDRYPH EMRPSTSTTA VHGGQSLEVT QADQRARNHY  180
SNHAGNSYNN NNRSSYNVVN VDKPADDGYN WRKYGQKPIK GCEYPRSYYK CTHVNCPVKK  240
KVERSSDGQI TQIIYKGQHD HERPQNRRGG GGVRDSGEIG DVHYIGGAGQ MMVESSDDSG  300
YAKNHHDDDD YDEDLPASKI RKIDGVSTTH RTVTEPKIIV QTRSEVDLLD DGYRWRKYGQ  360
KVVKGNPHPR SYYKCTTANC TVRKHVERAS TDAKAVITTY EGKHNHDVPA ARNGVGSSAA  420
AAVGTSDHHR MRSMPGSNNM SFGNSNNDTG QSPVLLRLKE EKISMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38206410878Probable WRKY transcription factor 4
2lex_A3e-38206410878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020676m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408459.10.0probable WRKY transcription factor 58 isoform X1
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLV4M4N40.0V4M4N4_EUTSA; Uncharacterized protein
STRINGXP_006408459.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.10.0WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]