PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10020544m | ||||||||
Common Name | EUTSA_v10020544mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | C2H2 | ||||||||
Protein Properties | Length: 508aa MW: 55863 Da PI: 8.2881 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Thhalv10020544m 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 95 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.38E-6 | 95 | 118 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.1E-5 | 96 | 118 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 138 | 168 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.38E-6 | 168 | 193 | No hit | No description |
SMART | SM00355 | 180 | 173 | 193 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MNKDMLLHQQ VQQQEENMSN LTSASGDQAS VSSGNRTEAS GSNYFPHQQQ QLEQQQQFFV 60 PESQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRSNK EVIRKKVYIC PEESCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK 180 KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPQNQNH 240 QPNPLLIHQP SSHHHQTQPN MNVSSPSSSS HNIINSLHFG TNNGTSNINS SSNHLHTFPV 300 KKEQQQSNDH IINYHHHSIP PWLAPQPQDL ISSNPNPSNG GGGGGGLFSL AASPAMSATA 360 LLQKAAQMGS TKTPPLPPTI EFERSAHHNN LTTTMAAMMT SPSGFISSNN NNQVLFQDYN 420 ASGFDHNGGE EAFDDTFGGF LRTNAATTAS AAGSDQNKSG GGGEGLTRDF LGLRPLMSHN 480 EILSFAGLGN CINGPASDQL HPKPWQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-32 | 169 | 237 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 9e-32 | 169 | 237 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 135 | KLKQRSNKEVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00355 | DAP | Transfer from AT3G13810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10020544m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361797 | 0.0 | AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. | |||
GenBank | AY091693 | 0.0 | AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407162.2 | 0.0 | protein indeterminate-domain 11 | ||||
Refseq | XP_024015104.1 | 0.0 | protein indeterminate-domain 11 | ||||
Swissprot | Q9LRW7 | 0.0 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | V4LDU4 | 0.0 | V4LDU4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407162.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 0.0 | indeterminate(ID)-domain 11 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10020544m |
Entrez Gene | 18024505 |
Publications ? help Back to Top | |||
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