PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020128m
Common NameEUTSA_v10020128mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 766aa    MW: 88090.4 Da    PI: 8.2537
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020128mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.53.3e-2144118189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  Thhalv10020128m  44 EFYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 118
                      6***************************************876..............589***************************98 PP
2FAR167.63.1e-21205281191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnH+l p
  Thhalv10020128m 205 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 281
                      6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-1744118IPR004330FAR1 DNA binding domain
PfamPF031011.0E-16205281IPR004330FAR1 DNA binding domain
PfamPF105515.3E-25377469IPR018289MULE transposase domain
PROSITE profilePS5096610.373651687IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-8658684IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-8662689IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MVVKAYPLGM VRVMNNNGIG EDEGDSGVEP YVGLEFDTAE EAREFYNSYA TRTGFKVRTG  60
QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHELGG  120
HVEETTPRPS VQQRAPAPTK LAISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEESD  180
VQTQQHKATE PHAGLEFGSA NEACQFYQAY AEVVGFRVRI GQLFRSKVDG SITSRRFVCS  240
KEGFQHPSRM GCGAYMRIKR QDSGGWIVDR LNKDHNHDLE PGKKNAGMKK ITEDVTGGLD  300
SVDLIELNDF SNHMNKTREN TIGKEWYPVL LDYFQSKQAE DMGFFYAVEL DSNGSCMSIF  360
WADSRSRFAC SQFGDAVVLD TSYRKGDYSV PFAMFIGFNH HRQPVLLGGA LVADESKEAF  420
SWLFQTWLRA MSGRRPRSIV ADQDLPIQQA VAQVFPGTHH RFSAWQIRSK ERENLRSFPN  480
EFKYEYDKCL YQTQTTVEFD TMWSALVNKY GLRDNMWLRE IYEKRENWVP AYLRASFFGG  540
IPVNGTFEPF YGTSLNSLTS LREFISRYEQ GLEQRREEER KEDFNSYNLQ PFLQTKEPVE  600
EQCRRLYTLT IFRIFQSELA QSYNYLGLKT YEEGAISRFL VRKCGNENEK HAVTFSASNL  660
NASCSCQMFE YEGLLCRHIL KVFNLLDIRE LPSRYILHRW TKNAEFGFVR DVESGVTSQD  720
LKALMIWSLR EAASKYIEFG TSSLEKYKLA YEIMREGGKK LCWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020128m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602700.0AF360270.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankAY1504460.0AY150446.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407967.10.0protein FAR1-RELATED SEQUENCE 7 isoform X2
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLV4LFZ70.0V4LFZ7_EUTSA; Uncharacterized protein
STRINGXP_006407967.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]