PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019758m
Common NameEUTSA_v10019758mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 258aa    MW: 29676.7 Da    PI: 9.3395
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019758mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.13.1e-151050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +ie +s  + tf kR++gilKK +E+S+LC++ ++ ii+s+
  Thhalv10019758m 10 FIEKSSSSKKTFQKRKKGILKKVKEISTLCGVTACAIIYSP 50
                     79999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.783149IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-21293IPR002100Transcription factor, MADS-box
CDDcd002662.92E-26282No hitNo description
PRINTSPR004041.1E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-141051IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTRKKVKLAF IEKSSSSKKT FQKRKKGILK KVKEISTLCG VTACAIIYSP YTSNPDVWPS  60
TSGVQRVISD FQTLPEMDQQ KKWIAKLSEN LRRLGKDNRD QEMIEVMFQC WDGSLGRFHP  120
NILDLNDLGY VIKQYQREIN RKIEILESSS MEMAASATTA PAAPAATLRE VYSSFSSAAA  180
ATFFNSIQQQ QHHHQHQQFC HPATPHVGFY EKTQNMNLNQ IHNPIQQHRF MEMMNHPDQM  240
SDAYEHLDNR HNPFHNH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019758m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391380.11e-127agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-78AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4KFL20.0V4KFL2_EUTSA; Uncharacterized protein
STRINGXP_006391311.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-65AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]