PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10019554m

Common Name

EUTSA_v10019554mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 297aa MW: 33622.1 Da PI: 5.9091

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10019554m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.1	2.6e-26	128	178	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl Thhalv10019554m 128 SKALSMETISRYFYMPITQAAMELNVGLTLLKRRCRELGIRRWPHRKLMSL 178 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	118	200	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-21	131	178	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MADHKLNEEK PFSFLAHSPF FDHSSLTYPL FDWEVELFPL HKDSASQAFS LPTPSLPLPD 60 LEPLSQDVLD SYSSASGNET EQNRGEGDLE KNTEHEAVQE RNKKRKINRE HSVRIVGDIT 120 TYTTCSASKA LSMETISRYF YMPITQAAME LNVGLTLLKR RCRELGIRRW PHRKLMSLLT 180 LISNVKELQK MEGEENAGKL KNALAMLEKE KKMIEEFPDL EFEDKTKRLR QACFKATHKR 240 KKKGSLKPDQ SQMSIPSCSS SGSVVSDESV DEGGIESDDE EMKYLLCGFT SEFSGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10019554m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390420.1	0.0	protein RKD2
Swissprot	Q9CA66	1e-144	RKD2_ARATH; Protein RKD2
TrEMBL	V4M983	0.0	V4M983_EUTSA; Uncharacterized protein
STRING	XP_006390420.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-127	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thhalv10019554m
Entrez Gene	18008606

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]