PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019133m
Common NameEUTSA_v10019133mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24303.7 Da    PI: 8.8295
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019133mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-235098149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k i++k +rqvtfskRr+g++KKA ELSvLC+a++ +i fs  +++y++
  Thhalv10019133m 50 KEIKEKNRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRFQRIYTF 98
                     689*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-2742101IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-2342111IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.44142102IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-204464IPR002100Transcription factor, MADS-box
PfamPF003195.4E-225298IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-206479IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-2079100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEHGEASSTT CLPSTEQNPL QNLTFPIKQQ RETKLQSSKT TKGRQKIEIK EIKEKNRRQV  60
TFSKRRTGLF KKAAELSVLC GAQIGIITFS RFQRIYTFGN VDTLIEKYLR KAPVMLRSHL  120
DGEALTGEED VDGRMWWERA VESVREEEME EYMKGLHGLR ENLWKKICEM GGDPTVQMNA  180
QAFPNPMAPT DWKITDENLT VRNDQGHAGK W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019133m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390670.21e-156MADS-box transcription factor 23
TrEMBLV4M9V81e-157V4M9V8_EUTSA; Uncharacterized protein
STRINGXP_006390670.11e-157(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.15e-75M-type_MADS family protein