PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019064m
Common NameEUTSA_v10019064mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 242aa    MW: 26359.8 Da    PI: 4.8389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019064mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-193585155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  Thhalv10019064m 35 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 85
                     79*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.72E-233595No hitNo description
PfamPF008476.0E-133585IPR001471AP2/ERF domain
SMARTSM003801.5E-363699IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-223694IPR016177DNA-binding domain
PROSITE profilePS5103223.2883693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-323794IPR001471AP2/ERF domain
PRINTSPR003678.2E-113748IPR001471AP2/ERF domain
PRINTSPR003678.2E-115975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTESSISSLK QSSPVLDEDH HHQHQPSKKR VRSDPGYRGV RMRTWGKWVS EIREPRKKSR  60
IWLGTFSTAE MAARAHDAAA LTIKGTSAVL NFPELATYLP RPASSSPRDV QAAAAVAAAM  120
DFSSSSSAVV ISDSEHTAVV TEAHLSSSSS YSTSTSSSSL SPSSEEAASS TAEELSEIVE  180
LPSLETSYDE SWSEFVYVDS AYPPSPPWYF NNCYSFYYHS DENGTSMGEP FESSNFCPLF  240
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1837931572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019064m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042600.0AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608750.0AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390115.11e-174ethylene-responsive transcription factor ERF037
SwissprotO806541e-106ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLV4M8B41e-173V4M8B4_EUTSA; Uncharacterized protein
STRINGXP_006390115.11e-174(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.13e-46ERF family protein