PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10018976m | ||||||||
Common Name | EUTSA_v10018976mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 282aa MW: 31388.3 Da PI: 7.4243 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 4e-33 | 143 | 200 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp+vv++tYeg+H h+ Thhalv10018976m 143 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSEDPSVVITTYEGQHCHQ 200 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-34 | 127 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-28 | 134 | 200 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.608 | 137 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-38 | 142 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-26 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MNDPENPDLS NESAWRQLTA PDSDDFFDRD TSNILSDFSW NLHHSSSDHH RLDSGVTPTA 60 GVRSPVTTNL HSSTSSCSSS LAVIEVSTSN NPSATSSSSE DPAENSTAAK TPDTPKKEKK 120 KAQKRIRQPR FAFMTKSDVD NLEDGYRWRK YGQKAVKNSP FPRSYYRCTN SRCTVKKRVE 180 RSSEDPSVVI TTYEGQHCHQ NIGFPRGGIL TAHDPRNFTS HHHLPPPLPN PYYYQELLHQ 240 LHRDNTSSTR LPQPTTGDAP AVSNPSEEGL LGDIVQTMRN P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 132 | 199 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 132 | 199 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10018976m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353414 | 0.0 | AK353414.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391033.1 | 0.0 | probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 1e-134 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | E4MY17 | 0.0 | E4MY17_EUTHA; mRNA, clone: RTFL01-26-A16 | ||||
TrEMBL | V4KB36 | 0.0 | V4KB36_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391033.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4995 | 27 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 1e-106 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10018976m |
Entrez Gene | 18008966 |
Publications ? help Back to Top | |||
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