PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018827m
Common NameEUTSA_v10018661mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 337aa    MW: 37867.3 Da    PI: 8.2208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018827mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000393155123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     + C   dC   ++rk++L+rH+ tH
  Thhalv10018827m 31 FACYvdDCVANYRRKDHLNRHLLTH 55
                     5688889****************99 PP
2zf-C2H221.56e-07139163123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   Cgk F+  s+L++H+ +H
  Thhalv10018827m 139 HVCKetGCGKAFKYASQLQKHQDSH 163
                      79********************998 PP
3zf-C2H217.89.3e-06229254123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      +kC+   C+ +Fs  snL++H +  H
  Thhalv10018827m 229 FKCEveGCSSTFSKASNLRKHVKAvH 254
                      89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-62559No hitNo description
Gene3DG3DSA:3.30.160.606.8E-92757IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7623160IPR007087Zinc finger, C2H2
SMARTSM003552.93155IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803355IPR007087Zinc finger, C2H2
SuperFamilySSF576674.7E-55986No hitNo description
SMARTSM003550.386085IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3076090IPR007087Zinc finger, C2H2
PROSITE patternPS0002806285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-8134163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.61E-6135165No hitNo description
PROSITE profilePS5015711.074139168IPR007087Zinc finger, C2H2
SMARTSM003550.0016139163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141163IPR007087Zinc finger, C2H2
SMARTSM003550.24171196IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-4173194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
SMARTSM0035522199220IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.9E-8210264No hitNo description
Gene3DG3DSA:3.30.160.601.5E-8229254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.902229259IPR007087Zinc finger, C2H2
SMARTSM003555.9E-4229254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4255282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035515260286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRGYMLWTSI RLGDLLRSSS KYASITQKRP FACYVDDCVA NYRRKDHLNR HLLTHKGERF  60
KCPIENCKSE FSVHGNVSRH VKKFHSDGDS AKDDASNGSS GNDETGNAKD DASNGNSGKD  120
ETGNGDSQPS ECSAGQKQHV CKETGCGKAF KYASQLQKHQ DSHVKLNSVE AFCSEPGCMK  180
YFTNEECLKA HIRSSHQHIN CEICGSKHLK KNIKRHLRTH DEDSSPGEFK CEVEGCSSTF  240
SKASNLRKHV KAVHEDIRPF VCCFPGCGMR FAYKHVRDNH EKSGCHIYTC GDFVEADEDF  300
TSRPRGGLKR KQVTAEMLIR KRVMPPQFES EEQETC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A5e-111412804154PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018827m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304780.0AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D.
GenBankAY0542250.0AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY0660420.0AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY1866100.0AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390711.10.0transcription factor IIIA isoform X2
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLV4KDZ70.0V4KDZ7_EUTSA; Uncharacterized protein
STRINGXP_006390710.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.10.0transcription factor IIIA