PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018667m
Common NameEUTSA_v10018667mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 398aa    MW: 41351.7 Da    PI: 8.29
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018667mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.23.4e-3968178489
              TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...........ns 85 
                       k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s + s++           + 
  Thhalv10018667m  68 VKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGSGGggcgstifaqpS- 160
                      5899**********************************************************9999988855555554444444444433221. PP

              TCP  86 ssg................k 89 
                        +                +
  Thhalv10018667m 161 --KssssplsfhstgmslyD 178
                      ..023334444333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.03172126IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-3572192IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEIGTTQNPH DRQREAVATA EAGLQLNSTE NPSPGSVPFA GGISGSATSS GTSTTSSGSA  60
LAVVKSAVKK PSKDRHTKVD GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE  120
PAIIASTGTG TIPANFSTLN ASLRGSGGGG CGSTIFAQPS KSSSSPLSFH STGMSLYDDS  180
NGTNNGSSSS SSAVDPSRKM LNAAAAAQNA AVFGFHHQMY PPIMSTERSP ANLAKPYRED  240
YFKESEPSGS SQKPGQFQDQ DLGSGPGPGP GRVVPQPMWA MAPGTTNGGS AFWMLPMSGS  300
GGREQMQQQP GHQMWAFNPG NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE SNMAAAMRGG  360
RGDGLAMTLD QHQHQHHQQH HEPSQSQASE NGGDDKK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018667m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532390.0AK353239.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390717.10.0transcription factor TCP22
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLV4KL690.0V4KL69_EUTSA; Uncharacterized protein
STRINGXP_006390717.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-131TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]