PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018661m
Common NameEUTSA_v10018661mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 401aa    MW: 45272.4 Da    PI: 7.2104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018661mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00142144123
                     EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                     y C++Cg s s k++ ++Hi + H
  Thhalv10018661m 21 YLCQYCGISRSKKYLITSHIDKnH 44
                     56******************9988 PP
2zf-C2H220.81e-066789123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++Cp+Cg  F+ + +Lk+H+++H
  Thhalv10018661m 67 HTCPKCGDEFKKPAHLKQHMQSH 89
                     79*******************99 PP
3zf-C2H212.40.0004895119123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + C   dC   ++rk++L+rH+ tH
  Thhalv10018661m  95 FACYvdDCVANYRRKDHLNRHLLTH 119
                      5688889****************99 PP
4zf-C2H221.27.5e-07203227123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   Cgk F+  s+L++H+ +H
  Thhalv10018661m 203 HVCKetGCGKAFKYASQLQKHQDSH 227
                      79********************998 PP
5zf-C2H217.51.2e-05293318123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      +kC+   C+ +Fs  snL++H +  H
  Thhalv10018661m 293 FKCEveGCSSTFSKASNLRKHVKAvH 318
                      89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355412144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-46685IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.0E-46789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.7966794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576672.57E-1080123No hitNo description
Gene3DG3DSA:3.30.160.607.8E-1386123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.995119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76295124IPR007087Zinc finger, C2H2
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
SuperFamilySSF576676.17E-5123150No hitNo description
SMARTSM003550.38124149IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307124154IPR007087Zinc finger, C2H2
PROSITE patternPS000280126149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-8198227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.2E-6199229No hitNo description
PROSITE profilePS5015711.074203232IPR007087Zinc finger, C2H2
SMARTSM003550.0016203227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205227IPR007087Zinc finger, C2H2
SMARTSM003550.24235260IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-4237258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280237260IPR007087Zinc finger, C2H2
SMARTSM0035522263284IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.68E-8274328No hitNo description
PROSITE profilePS5015712.902293323IPR007087Zinc finger, C2H2
SMARTSM003555.9E-4293318IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-8293318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280295318IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4319346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035515324350IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280326350IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAEEEASVDV KTPKTKDIRN YLCQYCGISR SKKYLITSHI DKNHKMEVEE ERDDEACEDE  60
EEATGKHTCP KCGDEFKKPA HLKQHMQSHS LERPFACYVD DCVANYRRKD HLNRHLLTHK  120
GERFKCPIEN CKSEFSVHGN VSRHVKKFHS DGDSAKDDAS NGSSGNDETG NAKDDASNGN  180
SGKDETGNGD SQPSECSAGQ KQHVCKETGC GKAFKYASQL QKHQDSHVKL NSVEAFCSEP  240
GCMKYFTNEE CLKAHIRSSH QHINCEICGS KHLKKNIKRH LRTHDEDSSP GEFKCEVEGC  300
SSTFSKASNL RKHVKAVHED IRPFVCCFPG CGMRFAYKHV RDNHEKSGCH IYTCGDFVEA  360
DEDFTSRPRG GLKRKQVTAE MLIRKRVMPP QFESEEQETC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wjq_D5e-14193447275Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018661m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304780.0AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D.
GenBankAY0542250.0AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY0660420.0AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY1866100.0AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390710.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLV4MA310.0V4MA31_EUTSA; Uncharacterized protein
STRINGXP_006390710.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA