PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017700m | ||||||||
Common Name | EUTSA_v10017700mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 34934.3 Da PI: 4.287 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.6 | 1.7e-21 | 10 | 138 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatg 87 +GfrF+Ptd lv +L++ v + k +i+++d+yk ePw L++ v++ e++wy+F++r + gk+++r+ + g+W++ Thhalv10017700m 10 VGFRFRPTDLGLVRLHLRNMVVHGKSG---CITTLDVYKDEPWLLDH-VNNdlfYENQWYYFVPRPNLG--GKKPKRTvpgrgeSEGGTWRSVT 97 6********************999955...5**************84.333345678*******98753..4455554344444889******* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ke+ + ++++ g + +v+ k+ + ++ t+W+m ey+l Thhalv10017700m 98 SKKEIDDDNKKVEGYMQGFVYTKQVNGIPVGTNWLMTEYSL 138 *******9**************99999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.815 | 8 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.06E-27 | 8 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-14 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEETQNDRGV GFRFRPTDLG LVRLHLRNMV VHGKSGCITT LDVYKDEPWL LDHVNNDLFY 60 ENQWYYFVPR PNLGGKKPKR TVPGRGESEG GTWRSVTSKK EIDDDNKKVE GYMQGFVYTK 120 QVNGIPVGTN WLMTEYSLHN DVHDDLVLCW IRYNTDKKPK PEVGDQAPRL RNNVQVREDE 180 EADLTGFANV LEDMLVEGEE HGDITQQQQQ QGHDSGYETP MMTTKQSDNN NITMTTQSDD 240 NNNMTMTTQS NDNNNMNQWD DFGFDGYDNN MNQWDDFDFD GSENLMLNVD ELMAVEGDRK 300 TMG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017700m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024004175.1 | 0.0 | NAC domain-containing protein 6 | ||||
TrEMBL | V4M8U7 | 0.0 | V4M8U7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411316.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14544 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 7e-38 | NAC domain containing protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017700m |
Entrez Gene | 18026709 |