PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017337m | ||||||||
Common Name | EUTSA_v10017320mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | YABBY | ||||||||
Protein Properties | Length: 165aa MW: 18444.1 Da PI: 10.2012 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 190.1 | 1.1e-58 | 5 | 153 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ a q l+ + ++++ ++++ s+s+ ++ Thhalv10017337m 5 ATATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMVAALQSLSRPNF-----------------QATNYAMSEHGSSSRGHT 81 5789****************************************999887777665553.................233333333333333333 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + s+ +++ ++++ v+rPPekrqrv sayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Thhalv10017337m 82 K-IPSRISTRTITEQRVVNRPPEKRQRVRSAYNQFIKEEIQRIKANNPNISHREAFSTAAKNWAHFPHIHFGL 153 3.2356667777777789*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.0E-67 | 7 | 153 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.94E-8 | 97 | 146 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.0E-4 | 100 | 147 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MANSATATEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GHCTNLWSVN MVAALQSLSR 60 PNFQATNYAM SEHGSSSRGH TKIPSRISTR TITEQRVVNR PPEKRQRVRS AYNQFIKEEI 120 QRIKANNPNI SHREAFSTAA KNWAHFPHIH FGLMLESNKQ AKIA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017337m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353291 | 0.0 | AK353291.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409724.1 | 1e-120 | axial regulator YABBY 5 isoform X2 | ||||
Refseq | XP_006409725.1 | 1e-120 | axial regulator YABBY 5 isoform X2 | ||||
Swissprot | Q8GW46 | 1e-113 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | E4MXP4 | 1e-119 | E4MXP4_EUTHA; mRNA, clone: RTFL01-24-G08 | ||||
TrEMBL | V4MF80 | 1e-119 | V4MF80_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409726.1 | 1e-116 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-115 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017337m |
Entrez Gene | 18027619 |
Publications ? help Back to Top | |||
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