PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017261m
Common NameEUTSA_v10017261mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YA
Protein Properties Length: 199aa    MW: 22439.9 Da    PI: 9.4822
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017261mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.91.3e-3197153158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq+Rakle++++  +ks+kpy+heSRh hA+rRpRg+gGrF
  Thhalv10017261m  97 EEPVFVNAKQYHGILRRRQSRAKLEARNRA-IKSKKPYMHESRHLHAIRRPRGCGGRF 153
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-3595156IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.35396156IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-2698153IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-2499121IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860101121IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.8E-24130153IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTSSVHELSD NNESHKKQER SDSQTRPSVP SGRSSESIDT NSVYSEPMAH GLYPYPDPYY  60
RSVFAQQAYL PHPYPGVHMQ LMGMQQHGVP LQCDAVEEPV FVNAKQYHGI LRRRQSRAKL  120
EARNRAIKSK KPYMHESRHL HAIRRPRGCG GRFLNAKKKN GDHKAEEEED EATSDENASE  180
ASSSRRPEKL AMAPNGRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2096163168NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017261m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533790.0AK353379.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-41-M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410622.11e-146nuclear transcription factor Y subunit A-4
RefseqXP_006410623.11e-146nuclear transcription factor Y subunit A-4
SwissprotQ8VY641e-130NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLE4MXY21e-145E4MXY2_EUTHA; mRNA, clone: RTFL01-41-M24
TrEMBLV4NYQ91e-145V4NYQ9_EUTSA; Uncharacterized protein
STRINGXP_006410622.11e-146(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.11e-120nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]