PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017165m | ||||||||
Common Name | EUTSA_v10017165mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26688.2 Da PI: 4.4704 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.8 | 7.9e-43 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+l Thhalv10017165m 61 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQL 154 7********************************************************************************************* PP DUF260 95 allkee 100 a+++ e Thhalv10017165m 155 AKTQVE 160 *99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.228 | 60 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-42 | 61 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLKMEINGGT SAATPTASDV AIPVAAVSET TTPVTSPSPT SSPPPPLSPQ QPPQPPVVLS 60 PCAACKILRR RCADKCVLAP YFPPTDPAKF TIAHRVFGAS NIIKFLQELP ESQRTDAVNS 120 MVYEAGARMR DPVYGCAGAI YHLQRQVSEL QAQLAKTQVE LVSMQLQRSD LLALLYKMEQ 180 TKLLAQEQGQ QNMSFESSFE SGDEFISSPD EVVMSSFGFL EEDNNNNNNN NNNPLLSWWD 240 PLET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-40 | 53 | 162 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-40 | 53 | 162 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017165m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473840 | 0.0 | AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409877.1 | 0.0 | LOB domain-containing protein 11 | ||||
Swissprot | Q9SK08 | 1e-122 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | V4LL88 | 1e-180 | V4LL88_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409877.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-101 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017165m |
Entrez Gene | 18028055 |