PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017149m | ||||||||
Common Name | EUTSA_v10017149mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27594.1 Da PI: 4.9088 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.4e-17 | 85 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+ aeeAa a+++a+ + +g Thhalv10017149m 85 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATKG 135 69*******.**********44465..**********************87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.11E-28 | 84 | 144 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-21 | 85 | 145 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.1E-35 | 85 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-29 | 85 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.891 | 85 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 85 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEYSQSTMYS SPSSWSSSQE SFLWNESSIL DQSFDHQSFY PSYNYSDDFF SFESSEMLIK 60 EETQNGDVSN SEEEEKVGFI DEEKSYRGVR KRPWGKFAAE IRDSTRNGIR VWLGTFDKAE 120 EAALAYDQAA FATKGALAVL NFPVEVVRES LKQMDNVNLH DGGSPVMALK RKHSLRNRPR 180 GKKRASSSSS SSSSSTSSNY SSSSSSSSSS SSTSRSNKQS VVKQESGTLV VFEDLGAEYL 240 EQLLMSSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-27 | 84 | 146 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-26 | 82 | 145 | 11 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00286 | DAP | Transfer from AT2G31230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017149m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410255.1 | 1e-180 | ethylene-responsive transcription factor 15 | ||||
Swissprot | Q8VYM0 | 1e-123 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | V4MGN1 | 1e-178 | V4MGN1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410255.1 | 1e-179 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3990 | 18 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 1e-91 | ethylene-responsive element binding factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017149m |
Entrez Gene | 18027148 |
Publications ? help Back to Top | |||
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