PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017090m

Common Name

EUTSA_v10017090mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 266aa MW: 29764.6 Da PI: 9.8941

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017090m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99	3.4e-31	55	108	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR Thhalv10017090m 55 PRLRWTPDLHLSFVRAVQRLGGPHRATPKLVLQMMNLKGLSISHVKSHLQMYRG 108 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-28	51	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.122	51	111	IPR017930	Myb domain
SuperFamily	SSF46689	1.59E-13	55	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-22	55	109	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-9	56	107	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MAGTSSPEKC STWLDLNREE AVEKNNEEDQ SSVEDEDQHV TSSNNVRQYV RSNMPRLRWT 60 PDLHLSFVRA VQRLGGPHRA TPKLVLQMMN LKGLSISHVK SHLQMYRGKK LEASSFHEIG 120 AMMGGQRRCL LDMSYGDLRN VYNTKTVPLR VHNQGAVFTN LGGNFVIRPS SWCNGNEWHG 180 FCGGLDRDST KSKTLPLLEI KRTTHEKRVR EEQGREVSSL AKRSKLMSGG GTQLPEFGNC 240 RQKPTDGINT MLSLSLFSTS SGDRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	56	107	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	56	107	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	56	107	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	56	107	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017090m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411533.1	0.0	uncharacterized protein LOC18026464
TrEMBL	V4P139	0.0	V4P139_EUTSA; Uncharacterized protein
STRING	XP_006411533.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	1e-115	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017090m
Entrez Gene	18026464