PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017048m
Common NameEUTSA_v10017048mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 283aa    MW: 31509.8 Da    PI: 8.3847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017048mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06254276223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C++ F+++ +L++Hi + H
  Thhalv10017048m 254 VCPKCSRGFRDPVDLVNHIERdH 276
                      8******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.97E-12457No hitNo description
PROSITE profilePS510397.8261056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.9E-101152IPR000058Zinc finger, AN1-type
PfamPF014282.4E-131349IPR000058Zinc finger, AN1-type
SMARTSM001543.2E-61352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.5E-1191148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.02E-993144No hitNo description
PROSITE profilePS510398.17898151IPR000058Zinc finger, AN1-type
PfamPF014281.6E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.0073101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.889216244IPR007087Zinc finger, C2H2
SMARTSM003550.14216239IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.22E-5217272No hitNo description
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891253281IPR007087Zinc finger, C2H2
SMARTSM003550.14253276IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDICKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEQL TFSNTIKCRD  120
CNMDHCLKHR FGPDHACPGP RKPESSFPFM GFLSGSSRKE TKTTRPHKAP ASTSSSSSSS  180
RWSNLLSSAE AGISRLGNDI SHKLHISSSS SDGIVEVCPQ CGAKFSSVAI LVEHVEKTHE  240
RNKKQNHRKV DVCVCPKCSR GFRDPVDLVN HIERDHEGTS RA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017048m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411453.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-170SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLV4P0V00.0V4P0V0_EUTSA; Uncharacterized protein
STRINGXP_006411453.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-167C2H2 family protein