PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016913m
Common NameEUTSA_v10016913mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 333aa    MW: 36481.2 Da    PI: 4.2126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016913mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.7e-1870120155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr++  +g+WvAeIr+p   g r  r +lg+f + +eAa a+++a+++++g
  Thhalv10016913m  70 CDYRGVRQRT-WGKWVAEIREP---G-RgSRLWLGTFPSSYEAALAYDEAARAMYG 120
                      68*****999.**********8...4.45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-1370120IPR001471AP2/ERF domain
CDDcd000187.04E-3070129No hitNo description
PROSITE profilePS5103221.1471128IPR001471AP2/ERF domain
SMARTSM003803.8E-3471134IPR001471AP2/ERF domain
PRINTSPR003677.4E-97283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2972129IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1972129IPR016177DNA-binding domain
PRINTSPR003677.4E-994110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MPSEIVVRKR KSRDGTTVAE TLQKWRDYNE QTKAASCNDD GGLKSLRKAP AKGSKKGCMK  60
GKGGPENGIC DYRGVRQRTW GKWVAEIREP GRGSRLWLGT FPSSYEAALA YDEAARAMYG  120
QAARLNLPDI TDGSSLIAPT VSSSITTLSD ESEVCALEDT HVRSGFGHVK LEDGGDELVP  180
LKSSMCVKEE VEVKEEMREL NSADASGIEL APKEETLDEW LVGIGNEQEP WDFGVDEVFD  240
VDELLGLLSE IDVSGQETAQ GQVDRESNLT YQMQFPDANL LGSLDHTETA HHFVQPSETE  300
NTGMDLDPPR FDDLDIEDID FEGGEKDDQG GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1772128360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016913m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411292.10.0dehydration-responsive element-binding protein 2C isoform X1
SwissprotQ8LFR21e-151DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLV4LQ850.0V4LQ85_EUTSA; Uncharacterized protein
STRINGXP_006411292.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-101ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]