PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10016692m | ||||||||
Common Name | EUTSA_v10016692mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 430aa MW: 47019.1 Da PI: 9.6546 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 6.9e-32 | 161 | 216 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers +++v ei+Y+geHnh Thhalv10016692m 161 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSM-EGQVSEIVYQGEHNHL 216 9***************************************.***************5 PP | |||||||
2 | WRKY | 103 | 1.7e-32 | 348 | 405 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+ Thhalv10016692m 348 EDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 405 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-27 | 156 | 218 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-33 | 159 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-24 | 160 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-25 | 161 | 215 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.446 | 161 | 218 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-32 | 337 | 405 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.651 | 342 | 407 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-27 | 343 | 405 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-38 | 347 | 406 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-26 | 348 | 405 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MEVKESERVV IAKPVASRPS CSSFRTFTEL LTDSVTVSPQ SNCHDTVDAA IRPKTLRFKQ 60 PAAPVSSPRA DGNGIGKSCD DSDSKNYVVY KPKAKLVSKA TVSVLANMLQ GNPQQTWRQT 120 EAAAYGKSVS QGTHRAGTNL VQKVPSFTES ETSIGDRSSV DGYNWRKYGQ KQVKGSECPR 180 SYYKCTHPKC PVKKKVERSM EGQVSEIVYQ GEHNHLKPSC PLPRRASSSS SSGLQKPPKG 240 LVSEGSMGQD TNSVYHQSLW SSQSSDSSQN RTEKMNEGCV VTPFEFAVPR SANSTGGTSD 300 SGCRSSQCDE GSIGGELDDP SRSKRRKNEK QSSEAGVSQG SVESDSLEDG FRWRKYGQKV 360 VGGNAYPRSY YRCTSANCRA RKHVERASDD PRAFITTYEG KHNHHLLLRP PTSSTNLPFN 420 STQHSKQPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 148 | 406 | 3 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 148 | 406 | 3 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10016692m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410906.1 | 0.0 | WRKY transcription factor 44 isoform X4 | ||||
Swissprot | Q9ZUU0 | 0.0 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | V4M7R8 | 0.0 | V4M7R8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410906.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8362 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10016692m |
Entrez Gene | 18026811 |