PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016616m
Common NameEUTSA_v10016616mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 464aa    MW: 52003.9 Da    PI: 5.3155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016616mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-12258299854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er RR + N++f+ L+ l+P++     +K++ a+i+ +A++YIk+L
  Thhalv10016616m 258 TERERRVHFNDRFFDLKNLIPNP-----TKNDRASIVGEAIDYIKEL 299
                      59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-13242312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.164250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-8256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9258299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-11258311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-11259304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEVERGSIYE EMGCFDPNTP AEVTAENGFS HAGPPPPPPS QILVAGSTSN SNCSVEVEDL  60
SEFHLSPQDC PQASSTPLQF PPPPDHQFQI NINLINQMAH DQQQQQQHSN WDNNGYQDFV  120
NMGPNSATTP DLLSLLHLPR CSLPPPSHSM LPNSSISFPD IMSSSSAAAV MYDPLFHLNF  180
PLQPRDQSQQ RNGSCLLGAE DHIHMDANGE GINMMYYNNN DDNNNNNNHG GFDNGVFEFN  240
SGGNRKGRGS GKSRTFPTER ERRVHFNDRF FDLKNLIPNP TKNDRASIVG EAIDYIKELL  300
RTIEEFKMLV EKKKIGKFRS KKKARTGGEE DQEQEEDTVS YRPQSEVDQS CFNKKSNNNS  360
LRCSWLKRKS KVTEVDVRII DDEVTIKLVQ KKKVNCLLFT TRVLDQLQLD LHHVAGGQIG  420
EHYSFLFNTK ICEGSCVYAS GIADTVMEVV EKQYMEAVPI NGY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016616m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003913.10.0transcription factor bHLH10
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLV4M9D80.0V4M9D8_EUTSA; Uncharacterized protein
STRINGXP_006410254.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]