PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016315m
Common NameEUTSA_v10016315mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 724aa    MW: 78927.1 Da    PI: 6.5598
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016315mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Thhalv10016315m 306 PCPDFRK-GACRRGDMCEYAHG 326
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.87E-1639182IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-1741184IPR020683Ankyrin repeat-containing domain
CDDcd002046.10E-1447181No hitNo description
PfamPF127963.1E-1084157IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.9989192IPR020683Ankyrin repeat-containing domain
SMARTSM002480.007889119IPR002110Ankyrin repeat
PRINTSPR014153.8E-590105IPR002110Ankyrin repeat
SMARTSM002480.0051124156IPR002110Ankyrin repeat
PROSITE profilePS5008812.129124159IPR002110Ankyrin repeat
PRINTSPR014153.8E-5143157IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5306326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4306328IPR000571Zinc finger, CCCH-type
SMARTSM0035668336359IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.963336360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MCCGSDRLNK IVSSTSSWPA SFEDTNLLTN TDMNHLRVET EDTFASLLEL AANNDVEGVR  60
LSIERDPSCV DEAGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSIDVIKLIV SLTDANVNRA  120
CGNDLTTALH CAASGGAVNA IQVVKLLLAA GADLNLLDAE GQRAGDVIVV PPKLEGVKLM  180
LQELLSADGS STAERNLRVV TNLPNRNSTS PSHSPTGENG EYPLGSPLGS PFKLKSTEFK  240
KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE  360
ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSAVSVMS PLSPSAAANG MSHSNMAWPQ  420
PNVPALHLPG SNLQSSRLRS SLNARDIPQD EFSMLADYEQ QQLLNEFSNS LSRSGRMKSM  480
PPSNLEDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQQQQQQ QQSMLSPINT  540
SFSSPKSVDH SLFSGGGRMS PRNVVEPISP MSSRVSMLAQ CVKQQQQQQQ QQQQQQQHQF  600
RSLSSRELRT NSSPIVGSPV NNNSWSSKWG SSNGKPDWGM SSEALGKLRS SSSFDGDEPD  660
VSWVQSLVKE SPTEAKEKVA ASSSSSSGEN VKQPTAVEAV MDHSGLEAWI EQMQLDQLVA  720
QQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016315m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525550.0AK352555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411461.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLE4MVK80.0E4MVK8_EUTHA; mRNA, clone: RTFL01-01-D15
TrEMBLV4M9940.0V4M994_EUTSA; Uncharacterized protein
STRINGXP_006411461.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]