PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016312m
Common NameEUTSA_v10016312mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 727aa    MW: 81791.3 Da    PI: 6.4661
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016312mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.83e-1123527231373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+avs +d + a++lL ++++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts    s+ l+a++++  v+P+ k +
  Thhalv10016312m 352 LRTLLVSCAQAVSVNDRRTAEELLRQVRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---ASDMLKAYQTYISVCPFKKTA 442
                      6789**************************************************************9999...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + aN+ I+    +++++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g   +e + etg+rLa+++++ +vpfe+n  +a+++
  Thhalv10016312m 443 IIFANHNIMHLSTNAKTIHIIDFGISYGFQWPPLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGHRLARYCQRYNVPFEYNG-IAQKC 535
                      *********************************************************99*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++++gE +aVn+ ++  +llde+v+++s+rd+vLkl+k+++P+v++ +    ++n++ F++rf e + +ys+lfd+ +++l re+ 
  Thhalv10016312m 536 ETIRVEDLKLREGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIKKIKPDVFIPSILSGSYNAPFFVTRFREVMFHYSSLFDMCDTNLTREDP 629
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kl+++  + s+++ v+++ ++l++gWk+r +++ S W
  Thhalv10016312m 630 MRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQLPLEKELVQKLKLMVESGYkSKEFDVDQDGNWLLQGWKGRIVYASSTW 723
                      *************************************************************9988899************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.054326703IPR005202Transcription factor GRAS
PfamPF035141.1E-109352723IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MGSYSAGFPG SFDNFDFNYQ TDFTGLGNGF YLNDQPLLEI PSPLPPLPPS EPYSQHNLAA  60
CDADFSDSVL KYISQVLMEE DMEEKACMFH DALSLQAAEK SLYEALGEKY PDSQPLTTTT  120
TSTVPLVDSP DGSSSTYASS TTTSSDWSFD CLENNRPSWL HTPIPSNFVF NSTSSTRSSP  180
QSVGGDNAVL GSSFSDDLVS NMFNDSELAF QFKRGVEEAS KFLPKSSQLV IDVENYIPAS  240
RSKANEPKEL NSVPHRLTGK KSHCREDELL TEERSKKQSA VSVDETELSE MFDKILLFGR  300
PKEKPLCILQ ENFPKEPAKS SPLSKGHKGE ATQAQRPAAS SGNSYMKETP DLRTLLVSCA  360
QAVSVNDRRT AEELLRQVRQ HSSSYGDGTE RLAHYFANSL EARLAGIGTQ VYTALSSKKT  420
SASDMLKAYQ TYISVCPFKK TAIIFANHNI MHLSTNAKTI HIIDFGISYG FQWPPLIHRL  480
AWRRGSSCKL RITGIELPQR GFRPAEGVIE TGHRLARYCQ RYNVPFEYNG IAQKCETIRV  540
EDLKLREGEF VAVNSLFRFR NLLDETVAVH SPRDTVLKLI KKIKPDVFIP SILSGSYNAP  600
FFVTRFREVM FHYSSLFDMC DTNLTREDPM RVMFEKEFYG REIMNVVACE GTERVERPES  660
YKQWQARAMR AGFRQLPLEK ELVQKLKLMV ESGYKSKEFD VDQDGNWLLQ GWKGRIVYAS  720
STWVPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-463497232374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016312m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409947.10.0scarecrow-like protein 33
RefseqXP_024016820.10.0scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLV4LLG70.0V4LLG7_EUTSA; Uncharacterized protein
STRINGXP_006409947.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein