PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10015842m | ||||||||
Common Name | EUTSA_v10015842mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WOX | ||||||||
Protein Properties | Length: 152aa MW: 17455.9 Da PI: 10.2047 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.3e-20 | 26 | 87 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t eq++ L +lF+ r+ps++++++++++l +++ ++V++WFqN++a+e++ Thhalv10015842m 26 KCGRWNPTVEQVKLLTDLFKAgLRTPSTDQIQKISTELsfygKIESKNVFYWFQNHKARERQ 87 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.5 | 2.3e-36 | 26 | 89 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt eQ+k+L++l+k+GlrtP++++iq+i++eL+ yGkie+kNVfyWFQN+kaRerqk+ Thhalv10015842m 26 KCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQKR 89 678***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.576 | 23 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-4 | 25 | 92 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-17 | 27 | 87 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.23E-11 | 28 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.10E-5 | 29 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-7 | 29 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MSMGGFSIKA RGLGNNNNNG GGTGTKCGRW NPTVEQVKLL TDLFKAGLRT PSTDQIQKIS 60 TELSFYGKIE SKNVFYWFQN HKARERQKRR KISTVDFDHR QDTDLFRPPQ DNPRRHQPPP 120 KGYSLFFPDT YSCISIMVMI MSCDTYLTLN IL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor that plays a central role during developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10015842m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189201 | 1e-111 | AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399035.2 | 4e-87 | WUSCHEL-related homeobox 7 | ||||
Swissprot | Q9FFK0 | 2e-64 | WOX7_ARATH; WUSCHEL-related homeobox 7 | ||||
TrEMBL | V4LL33 | 1e-111 | V4LL33_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006399035.1 | 1e-112 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4014 | 28 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05770.1 | 1e-66 | WUSCHEL related homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10015842m |
Entrez Gene | 18017893 |
Publications ? help Back to Top | |||
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