PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10015677m

Common Name

EUTSA_v10015677mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HD-ZIP

Protein Properties

Length: 693aa MW: 77167 Da PI: 6.8177

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10015677m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.4e-19	52	106	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k +++t++q++eLe++F+ +++p++++r+eL +kl L+ +q+k+WFqNrR+++k Thhalv10015677m 52 TKYHRHTSYQIQELESFFKVCPHPTEKQRRELGSKLALESKQIKFWFQNRRTQMK 106 678899**********************************************999 PP
2	START	162.7	2.6e-51	218	435	3	205
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 a ea++el+k+a+++ p+W k s e n de++++f+ s + e +r++g+v ++ lve+l+d++ +W e+++ a+t+evi Thhalv10015677m 218 AMEAMDELMKLAELGNPLWIKCSkkekETMNHDEYRSIFSASSKhlgFVAEGSRETGLVLIDSLALVETLMDTN-RWAEMFEcivaVASTVEVI 310 779******************998888899***9887789999999******************.*************** PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 s+g g lqlm ae+q++splvp R f f+Ry++q+g+g w+ivdvS d ++ ++ +s+ ++lpSg++i++ +ng skvtw+eh + Thhalv10015677m 311 SNGnsesrnGSLQLMEAEFQVMSPLVPiRQFKFLRYCKQHGDGLWAIVDVSFDKYREGENLKSYGGFKRLPSGCIIQDIGNGFSKVTWIEHSEF 404 ****************************************************************************************** PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqce 205 ++ +h l+++l++s++ ga +w+atlqr ce Thhalv10015677m 405 EE--IHTLYQPLLSSSVGLGATKWLATLQRRCE 435 99..566***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.17E-18	32	108	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-19	37	108	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-15	47	112	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.941	48	108	IPR001356	Homeobox domain
Pfam	PF00046	8.7E-17	52	106	IPR001356	Homeobox domain
CDD	cd00086	4.91E-15	55	108	No hit	No description
PROSITE profile	PS50848	40.923	207	439	IPR002913	START domain
CDD	cd08875	5.81E-105	212	435	No hit	No description
SuperFamily	SSF55961	1.19E-30	213	437	No hit	No description
SMART	SM00234	1.0E-34	216	436	IPR002913	START domain
Pfam	PF01852	2.6E-44	218	436	IPR002913	START domain
SuperFamily	SSF55961	1.01E-17	461	684	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MNGDDVDLSR GELNQSFPAR FKDDDEFESD SFDAMSGDDD KHEQRPKKKK KTKYHRHTSY 60 QIQELESFFK VCPHPTEKQR RELGSKLALE SKQIKFWFQN RRTQMKTQIE RHENVILRQE 120 NQKLRVEIGI LKEAMRSPVC NNCGGSVIPG EVSYEQQQLR IENAKLKHEL EKLIALGNRF 180 VGGSVSLEQP SNVGIETQHL PLGRGTMMCE SSTFMGLAME AMDELMKLAE LGNPLWIKCS 240 KKEKETMNHD EYRSIFSASS KHLGFVAEGS RETGLVLIDS LALVETLMDT NRWAEMFECI 300 VAVASTVEVI SNGNSESRNG SLQLMEAEFQ VMSPLVPIRQ FKFLRYCKQH GDGLWAIVDV 360 SFDKYREGEN LKSYGGFKRL PSGCIIQDIG NGFSKVTWIE HSEFEEIHTL YQPLLSSSVG 420 LGATKWLATL QRRCESYTTL LSSQDHTGLS LAGTKSILTL AQRMKRNFYS GITASSIHKW 480 EKLLAENVGQ GTRILTRKSL EPSGVVLSAA TSMWLPVTQQ RLFEFLCDGK CRNQWDILSN 540 GASMETMLLV PKGHQEGRCV SLLRPAGKDQ NESSMLILQE TWNDASGALV VYAPVDVPSM 600 NVVMSGGDSA NVPLLPSGFS ILPDGSSSSS GQVDSNGGLV NHESKGCLLT LGFQILVNSL 660 PTSKLNVESV ETVNNLMACT IHKIRAALHI HA*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MNGDDVDLSR GELNQSFPAR FKDDDEFESD SFDAMSGDDD KHEQRPKKKK KTKYHRHTSY  60
QIQELESFFK VCPHPTEKQR RELGSKLALE SKQIKFWFQN RRTQMKTQIE RHENVILRQE  120
NQKLRVEIGI LKEAMRSPVC NNCGGSVIPG EVSYEQQQLR IENAKLKHEL EKLIALGNRF  180
VGGSVSLEQP SNVGIETQHL PLGRGTMMCE SSTFMGLAME AMDELMKLAE LGNPLWIKCS  240
KKEKETMNHD EYRSIFSASS KHLGFVAEGS RETGLVLIDS LALVETLMDT NRWAEMFECI  300
VAVASTVEVI SNGNSESRNG SLQLMEAEFQ VMSPLVPIRQ FKFLRYCKQH GDGLWAIVDV  360
SFDKYREGEN LKSYGGFKRL PSGCIIQDIG NGFSKVTWIE HSEFEEIHTL YQPLLSSSVG  420
LGATKWLATL QRRCESYTTL LSSQDHTGLS LAGTKSILTL AQRMKRNFYS GITASSIHKW  480
EKLLAENVGQ GTRILTRKSL EPSGVVLSAA TSMWLPVTQQ RLFEFLCDGK CRNQWDILSN  540
GASMETMLLV PKGHQEGRCV SLLRPAGKDQ NESSMLILQE TWNDASGALV VYAPVDVPSM  600
NVVMSGGDSA NVPLLPSGFS ILPDGSSSSS GQVDSNGGLV NHESKGCLLT LGFQILVNSL  660
PTSKLNVESV ETVNNLMACT IHKIRAALHI HA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269\|PubMed:16778018}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00559	DAP	Transfer from AT5G52170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10015677m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB025603	1e-121	AB025603.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19.
GenBank	CP002688	1e-121	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401857.1	0.0	homeobox-leucine zipper protein HDG7
Swissprot	Q9LTK3	0.0	HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBL	V4KZB1	0.0	V4KZB1_EUTSA; Uncharacterized protein
STRING	XP_006401857.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52170.1	0.0	homeodomain GLABROUS 7

Link Out ? help Back to Top
Phytozome	Thhalv10015677m
Entrez Gene	18018851

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]