PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015617m
Common NameEUTSA_v10015617mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 298aa    MW: 34753.5 Da    PI: 10.6194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015617mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612e-1919108194
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffk++ ++d +++++  +p +f+++ + +k  s +++++ ++g sW+v++  +k+++  y+ + GW++Fv++n L +++fv+F+++g++ f   
  Thhalv10015617m  19 FFKIFQSADLSSECMRAIPYNFMQRVS-EKDFSYKMVIRAQWGSSWKVEI--SKNPRFyYMEKHGWNQFVSDNALGDNEFVTFTHKGKMWF--D 107
                      99*********************8885.456999****************..******555569********************9988877..4 PP

                      E CS
               B3  94 v 94 
                      v
  Thhalv10015617m 108 V 108
                      4 PP
2B335.81.4e-112062781287
                      HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       ++ l +pk+f+e h   +++s+  t+ + +g  sWev +    + +r+++++GW + +++  L  gD ++Fkl++ 
  Thhalv10015617m 206 YLKFLAIPKRFVEGHI--PNKSTIFTIHHWKGnCSWEVLC--LVRENRTIFSSGWTKLAREYPLLIGDRCIFKLIKP 278
                      445699******9984..4567788888855559******..8888889************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-1914119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-1814115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-1518111No hitNo description
PROSITE profilePS5086312.84419114IPR003340B3 DNA binding domain
PfamPF023626.5E-1819106IPR003340B3 DNA binding domain
SMARTSM010198.5E-2119114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-15192282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-18193283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.926195289IPR003340B3 DNA binding domain
CDDcd100175.16E-12196285No hitNo description
SMARTSM010191.3E-12198288IPR003340B3 DNA binding domain
PfamPF023621.7E-9202280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MARNSGFCRI KNERKKLSFF KIFQSADLSS ECMRAIPYNF MQRVSEKDFS YKMVIRAQWG  60
SSWKVEISKN PRFYYMEKHG WNQFVSDNAL GDNEFVTFTH KGKMWFDVNI YHQNGKEILI  120
PRNTPTMAPS GIKKEQGESS YKDVKKEDET GDSTGGEDLE VRKKKAKESK TSKKKKLTSK  180
KVKNKIRSKK DKNGVPKFKI TIRKSYLKFL AIPKRFVEGH IPNKSTIFTI HHWKGNCSWE  240
VLCLVRENRT IFSSGWTKLA REYPLLIGDR CIFKLIKPTE LLLISKKARE KIIKIDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161175RKKKAKESKTSKKKK
2161176RKKKAKESKTSKKKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015617m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012244.10.0B3 domain-containing protein At3g17010
SwissprotQ9LSP61e-128Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLV4LNE70.0V4LNE7_EUTSA; Uncharacterized protein
STRINGXP_006399925.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-122B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]