PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015516m
Common NameEUTSA_v10015516mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 306aa    MW: 34154.5 Da    PI: 4.445
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015516mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.42.4e-101958443
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     e k +r+v  skRr++++ KA  L+ L +a++av + s+ 
  Thhalv10015516m 19 ETKQQRSVACSKRRKTLFSKAADLCRLSGANIAVFVTSPA 58
                     67899*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.348856IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-16867IPR002100Transcription factor, MADS-box
CDDcd002664.72E-22988No hitNo description
SuperFamilySSF554556.41E-151084IPR002100Transcription factor, MADS-box
PfamPF003194.4E-101966IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
DERMIMRGTK RKIEIEKRET KQQRSVACSK RRKTLFSKAA DLCRLSGANI AVFVTSPAES  60
SDVVYSFSGY SSASEIADCY LNGKLPLKTT TKLGFWWQDP DLYRYCDDLS EINLIEERLE  120
RVKQDLMACL EKKQKTQSVT GFDQNPNTSS LDKTIHSVSS SSTSSSQNPS TCSSSRFVSD  180
FVQSSHASSL SDISNSKFAS FGDQDPNYSS SLDEINAGAS SSQIDQNPSF WENLFNEHEF  240
GLNNDLWKTK DDTNSSMSLT QETPTEPVVY DVGGYDDEKS FWENLFNDDV FGLNNDFCDI  300
LAPIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015516m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401823.20.0agamous-like MADS-box protein AGL62
TrEMBLV4NBI50.0V4NBI5_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006401823.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.12e-76AGAMOUS-like 39