PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G27130.1

Common Name

AGL39

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 306aa MW: 34352.7 Da PI: 4.2188

Description

AGAMOUS-like 39

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G27130.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.8	3.8e-10	23	63	4	44
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 e k +r vt skRr++++ KA L+ +a++av + s+++ AT5G27130.1 23 ETKEQRAVTCSKRRQTVFSKAADLCLISGANIAVFVTSPSD 63 77899********************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.105	12	62	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.3E-19	12	71	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.26E-24	13	97	No hit	No description
SuperFamily	SSF55455	6.54E-16	14	95	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-9	23	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MPSSDSTMMK KGTKRKIEIK KRETKEQRAV TCSKRRQTVF SKAADLCLIS GANIAVFVTS 60 PSDSSDVVYS FSGYSSAYEI ADCYLNRKPP PKIVNPAGSK LGFWWEDPDL YHSCDDLSEL 120 SIIEDRLQRM KKHVMACLEK EEKSQLVSSF DQNPNSTCSL DVEDCDGSSY SQIASTFTPN 180 SVNEYCSDQT FSSFHGDQNP NLSSPSFDQD CYSSLYQICG ESSSQVASFD QNPSSEIQGF 240 ETEEEINQIN LLLQETQTEA NVNLDDEICF WNDLSNDDVF GLNSYFGLDN TNAMINFGDS 300 DFRRHV

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	30690545	0.0
Expression Atlas	AT5G27130	-
AtGenExpress	AT5G27130	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G27130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT5G38740, AT5G58890, AT5G65330, AT1G60040, AT1G65330, AT1G69120, AT1G77080

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G27130

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	TM021B04	0.0	AF007271.1 Arabidopsis thaliana BAC TM021B04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_198065.2	0.0	AGAMOUS-like 39
TrEMBL	F4K2U3	0.0	F4K2U3_ARATH; AGAMOUS-like 39
STRING	AT5G27130.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6395	14	42

Link Out ? help Back to Top
Phytozome	AT5G27130.1
Entrez Gene	832771
iHOP	AT5G27130
wikigenes	AT5G27130

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474]