PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015500m
Common NameEUTSA_v10015500mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 295aa    MW: 33992.6 Da    PI: 8.7484
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015500mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.4e-151254244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     ri n+  r +t+ kR+  +  KA E S+LC+++ ++i++++t 
  Thhalv10015500m 12 RIANDKTRITTYKKRKDCLYRKAGEFSTLCGVQTCLIVYGPTK 54
                     89**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-10162IPR002100Transcription factor, MADS-box
CDDcd002661.32E-20265No hitNo description
PROSITE profilePS5006613.063363IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-5525IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-16988IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141254IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-52540IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-54061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTREKIIVDR QRIANDKTRI TTYKKRKDCL YRKAGEFSTL CGVQTCLIVY GPTKATDEVV  60
SEPEIWPDET KARDIIRRYR DSVSNSCRKE AHVANFVNDL GKAKGMENKT NKRVKRNHHK  120
FCSWDEKLDK CSQEQLLGVF DAVTNKLQEA ILRQDRMIRA HHQAMETPFP QILMDPHYMS  180
QYFAEQQQQL MLANYNNLGF PVFSSQDDQI QTDPNLLENL TDLGLNQGLM MSKGNDGTQF  240
MQRQAPYYNL EPVVPRSATF NANPFPGYQG SFNIPWRLPG NQVGAWDFLE KKSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015500m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401028.10.0agamous-like MADS-box protein AGL82
SwissprotQ9FIM01e-133AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBLV4N9P70.0V4N9P7_EUTSA; Uncharacterized protein
STRINGXP_006401028.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-135AGAMOUS-like 82
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]