PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015325m
Common NameEUTSA_v10015325mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HRT-like
Protein Properties Length: 424aa    MW: 48415.3 Da    PI: 10.0854
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015325mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.24.8e-17280309231
         HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      CGvile+G +C+r PvkgRKRC eHKG+Ri
  Thhalv10015325m 280 CGVILENGVCCNRRPVKGRKRCIEHKGQRI 309
                      *****************************7 PP
2HRT-like46.75.2e-15330360131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      iCGvil +   C++ Pv  RKRCe HKGmRi
  Thhalv10015325m 330 ICGVILPNMEACTKRPVSRRKRCEDHKGMRI 360
                      8*****************************7 PP
3HRT-like24.16.4e-08400424226
         HRT-like   2 CGviledGsvCkrqPvkgRKRCeeH 26 
                      C +++++G +C+r+  kg KRC++H
  Thhalv10015325m 400 CEATTKNGLPCTRSSPKGSKRCWQH 424
                      99*********************** PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDFGDGASFA VVPTVYKRED YKRTKHDAVF SKWKVLIGSN DWEDFKNGKD GVGRYRIQNL  60
PRRSCPGLYE LGVAVIGRDQ SRKLDSDEVL AAYLGQAESV RSRLQRYGRS GAHLRNVHIL  120
NDCEIIESPD KKAVNGGLFE DIFSKEGSIL YRWAPMRSKR VAEATEGMLL STFDYAWNKG  180
SNGERRQLDL LEKLGDREFM SKRKSGISRV LFPFLRNQVG IRIKGDKHVL KEERKLSCDV  240
DEKKKSNHFL AAILKLSRSR PQPVSDRFDE IDGSCSDSAC GVILENGVCC NRRPVKGRKR  300
CIEHKGQRIY RVSPEKHTPP QPEIFTGQVI CGVILPNMEA CTKRPVSRRK RCEDHKGMRI  360
NAFLFLLNRT DREKTVKSEK PYSESHTEDT NKEKALNRFC EATTKNGLPC TRSSPKGSKR  420
CWQH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015325m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401287.20.0protein EFFECTOR OF TRANSCRIPTION 2
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLV4KXK50.0V4KXK5_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006401287.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2