PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015295m
Common NameEUTSA_v10015295mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 221aa    MW: 25622.2 Da    PI: 5.8997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015295mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.34.7e-214099359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                     Dg+ WrKYGqK++k+s++ rsYYrC+++   +C+++k+ ++ +++p v  +tY g+H+++
  Thhalv10015295m 40 DGFLWRKYGQKTIKKSDHQRSYYRCSYNidhNCRARKHEQKIKDNPPVYRTTYIGQHTCK 99
                     9**************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-223399IPR003657WRKY domain
PROSITE profilePS5081119.58933101IPR003657WRKY domain
SuperFamilySSF1182902.22E-2136100IPR003657WRKY domain
SMARTSM007745.3E-3038100IPR003657WRKY domain
PfamPF031063.6E-214099IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
EMVNTPPLPQ IRSPSKKRKI QSTNSSENWR DDSPDPIYYD GFLWRKYGQK TIKKSDHQRS  60
YYRCSYNIDH NCRARKHEQK IKDNPPVYRT TYIGQHTCKI NHKQDPIFTA VQDPVDDLKS  120
GRMIQFGKDL DQEKESHSSG FSSSVKHEED IIKEKTMEPY REITGDGQDC QYVMESSISP  180
SSSYPLPSSS GTESVFYDSD LLLDNFDSWD CYDQFDFGLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-1640991069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015295m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400762.21e-159probable WRKY transcription factor 38
SwissprotQ8GWF15e-96WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLV4KW451e-162V4KW45_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006400762.11e-163(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.18e-85WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]