PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10015280m | ||||||||
Common Name | EUTSA_v10015280mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 154aa MW: 17708 Da PI: 7.0585 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.7 | 3.2e-21 | 10 | 136 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkya...tgkrknra....tksgyWkatgkdkev 92 +d+e v + ++kv+++++++ e ++ diy++ePw L ++ + e+ke+ +F+kr ++ + tgk+k+r+ t +gyWkatgk k++ Thhalv10015280m 10 EDQEDVGFRFQPKVAKQPNHELELEDKDDIYDIEPWLLThTE--TdffESKELVYFVKRITQVSgkeTGKQKKRQvgekTCQGYWKATGKPKDI 101 588888888999******8887877777**********8322..2345778999999988776655578888886566677************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +g ++g k++L fy + ++ + + W+m ey+l Thhalv10015280m 102 VSEeTGVVIGRKRSLSFYVKGEK--KASGWTMVEYSL 136 *9867788**********44443..479*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.728 | 1 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-22 | 14 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-11 | 15 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MSMVEKHYTE DQEDVGFRFQ PKVAKQPNHE LELEDKDDIY DIEPWLLTHT ETDFFESKEL 60 VYFVKRITQV SGKETGKQKK RQVGEKTCQG YWKATGKPKD IVSEETGVVI GRKRSLSFYV 120 KGEKKASGWT MVEYSLHDGG SFQNQVLCQH KAP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10015280m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024012354.1 | 7e-95 | protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | V4N822 | 1e-109 | V4N822_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400378.1 | 1e-110 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 6e-32 | NAC domain containing protein 88 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10015280m |
Entrez Gene | 18018791 |