PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014563m
Common NameEUTSA_v10014563mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 236aa    MW: 26818.2 Da    PI: 5.7732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014563mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.81.4e-4261372128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      + GfrF Pt++el+++yL++++eg++  ++++vi+ +d+++veP++Lp+    +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+  
  Thhalv10014563m   6 TLGFRFYPTEDELISFYLRNQLEGRSdDSMHRVIPVLDVFEVEPSHLPNvageRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPG 99 
                      67***********************95555677***************646666666888********************************** PP

              NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++
  Thhalv10014563m 100 PVFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137
                      ************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-464162IPR003441NAC domain
PROSITE profilePS5100546.9275162IPR003441NAC domain
PfamPF023651.1E-228136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEEELTLGFR FYPTEDELIS FYLRNQLEGR SDDSMHRVIP VLDVFEVEPS HLPNVAGERC  60
RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG  120
KAPTGRKTKW KMNEYKAVDE TVNVSTIPKL RHEFSLCRVY ITSGSSRAFD RRPVGVFQTE  180
RMLTSDVAVA ETSFRVESSP ETSISGGEHV DLFVSTEMVG GLTEPIWEWE QLNWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-32516720173NAC domain-containing protein 19
3swm_B5e-32516720173NAC domain-containing protein 19
3swm_C5e-32516720173NAC domain-containing protein 19
3swm_D5e-32516720173NAC domain-containing protein 19
3swp_A5e-32516720173NAC domain-containing protein 19
3swp_B5e-32516720173NAC domain-containing protein 19
3swp_C5e-32516720173NAC domain-containing protein 19
3swp_D5e-32516720173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014563m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758060.0AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBankAY0869440.0AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012032.11e-174NAC domain-containing protein 90 isoform X1
SwissprotQ9FMR31e-157NAC90_ARATH; NAC domain-containing protein 90
TrEMBLV4KW251e-173V4KW25_EUTSA; Uncharacterized protein
STRINGXP_006400742.11e-174(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-148NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]