PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014467m | ||||||||
Common Name | EUTSA_v10014467mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 255aa MW: 28541.8 Da PI: 8.6735 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.2 | 1.5e-30 | 41 | 129 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............seceaesssssasn 84 g+kdrhsk++T +g+RdRR+Rlsa +a++++dLqd+LG+ ++sk i+WLl++ak+ ++ l+ ++++++ Thhalv10014467m 41 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQVYDLQDRLGLSQPSKVIDWLLEAAKHDVDLLPPLQFIPSlsagagksfpgiF------------- 121 79*************************************************************888883333333222221............. PP TCP 85 sssg......k 89 + + Thhalv10014467m 122 ---EsfdlgsS 129 ...02222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-27 | 42 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.495 | 42 | 100 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSLTSREDMG IKQEDNDHTQ ATSLSWLRQN PRIVRVSRKF GGKDRHSKVC TVRGLRDRRI 60 RLSAMTAIQV YDLQDRLGLS QPSKVIDWLL EAAKHDVDLL PPLQFIPSLS AGAGKSFPGI 120 FESFDLGSSS LRTDTTQRES LDLERSKLVK FDESSNLDHR FFSNSRQSNK LCFPTLSAYN 180 SSSSSYHYNN LGHIQQYSLL DQSGNVTVTL SNNNDLNPQG METMSSIIPR YPSFLGGDQL 240 QLFSSNSNSS KQID* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-16 | 47 | 101 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-16 | 47 | 101 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00497 | DAP | Transfer from AT5G08070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014467m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241004 | 7e-90 | AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399294.1 | 0.0 | transcription factor TCP17 | ||||
Refseq | XP_024012319.1 | 0.0 | transcription factor TCP17 | ||||
Swissprot | Q9LEZ9 | 7e-95 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | V4LEA6 | 0.0 | V4LEA6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399294.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 8e-88 | TCP domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014467m |
Entrez Gene | 18018299 |
Publications ? help Back to Top | |||
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