PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10014409m

Common Name

EUTSA_v10014409mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 265aa MW: 30176.2 Da PI: 9.0007

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10014409m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	97	119	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H Thhalv10014409m 97 SCSVCSRVYPTSRLLSIHISEaH 119 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.11	69	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	5	96	119	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.091	134	159	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	136	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAMGMAVDTV GELGFPYWTP LRRRFPPDSP FFASGNVERE LLAKQVALDV TEDEINHLHK 60 FVETESRRIS CPIVGCPERL KSLENFEDHY KARHTASCSV CSRVYPTSRL LSIHISEAHD 120 SFFQAKVARG YDMYECLVEG CGLKFKNYKA RHRHLVDKHK FPTTFEFFKK TQLSKKQREK 180 LQRRRVSKLK HEEEKEEASS DAMEVEDKAG IDGLVSALST LTTSDTTPSN VSFGRRHGRG 240 LTFIPRSVHR EERTKPSSAP EPTT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10014409m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493748	0.0	AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399924.1	0.0	zinc finger protein 511
TrEMBL	V4LG31	0.0	V4LG31_EUTSA; Uncharacterized protein
STRING	XP_006399924.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9971	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-158	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Thhalv10014409m
Entrez Gene	18018785