PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014270m
Common NameEUTSA_v10014270mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 291aa    MW: 31673.2 Da    PI: 6.9629
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014270mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Thhalv10014270m 144 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 188
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.7293186IPR017884SANT domain
SMARTSM007172.6E-73284IPR001005SANT/Myb domain
CDDcd001673.11E-73581No hitNo description
SuperFamilySSF466893.88E-103589IPR009057Homeodomain-like
PROSITE profilePS5129420.491137193IPR017930Myb domain
SuperFamilySSF466894.41E-17139193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17140192IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-12141187IPR009057Homeodomain-like
SMARTSM007173.2E-13141191IPR001005SANT/Myb domain
PfamPF002495.0E-13144188IPR001005SANT/Myb domain
CDDcd001672.33E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEILRPTTSH VSGGNWLMEE TKSNVAVAAS GEVATWTAAE NKAFENALAV YDDNTPDRWQ  60
KVAAVIPGKT VSDVIKQYNE LEADVSSIEA GLIPVPGYIT SPFTLDWASG GGGGCNGFKL  120
GHQVGNKRSP AGRSPELERK KGVPWTEEEH KLFLMGLKKY GKGDWRNISR NFVITRTPTQ  180
VASHAQKYFI RQHSGGKDKR RASIHDITTV NLEDEASLET NKSSIVGQEQ RSRLTAFPWS  240
QTDNNGTHAD AFNITIGNAI SGVHSYGQAL LGAFNNADSC YDAQNTMFQL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-17361011176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014270m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401027.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-104DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4KWX60.0V4KWX6_EUTSA; Uncharacterized protein
STRINGXP_006401027.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]